2014 / December / mRNAseq workshops at Michigan State University¶
This is the material for two workshops given at MSU by Titus Brown and Matt Scholz. The first workshop (Dec 4/5) was on model organism mRNAseq, and the second workshop (Dec 10/11) will be on semi-model organism mRNAseq.
Both workshops were sponsored by iCER, http://icer.msu.edu/, and made use of the MSU High Performance Compute Center, http://hpcc.msu.edu/.
- 2014 / December / mRNAseq on semi-model organisms
- Semi-model organisms and RNAseq: an overview of the options
- Short read quality and trimming
- Building a new reference transcriptome
- Mapping reads to the transcriptome with TopHat
- Processing another sample with TopHat and HTSeq
- Using the HPC to run jobs in parallel
- Data analysis & differential expression
- Data analysis 2: more sequence fu
- Miscellaneous advice
- More resources
- 2014 / December / mRNAseq on model organisms
Indices and tables¶
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