Basic Statistics
Measure | Value |
---|---|
Filename | salivary_repl1_R1.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 100000 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGC | 424 | 0.424 | TruSeq Adapter, Index 10 (100% over 50bp) |
CTGGGATGCACCGGCCAGAGGCCATGCTGCTGCTGCTCACGCTTGCCCTC | 168 | 0.168 | No Hit |
GCAAGAGTCATTTTGACCAGCAGATTAATCAACTGTAAGACGGATCCTCA | 112 | 0.11199999999999999 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCTACTC | 25 | 0.005016898 | 56.974197 | 7 |
CCAGTCT | 45 | 9.34685E-4 | 42.436512 | 3 |
TATGCCG | 70 | 0.0 | 40.695858 | 46-47 |
TCGTATG | 65 | 5.456968E-12 | 40.174114 | 42-43 |
CGTATGC | 75 | 0.0 | 37.9828 | 44-45 |
GATCCAA | 75 | 6.8804966E-6 | 37.9828 | 5 |
CATCTAC | 50 | 0.0016123515 | 37.9828 | 5 |
CTCGTAT | 65 | 2.0372681E-10 | 36.521923 | 42-43 |
GCCGTCT | 85 | 1.07320375E-10 | 30.721382 | 48-49 |
TGGATTG | 40 | 4.4924213E-4 | 29.67406 | 16-17 |
GTATGCC | 105 | 1.8189894E-12 | 29.39145 | 44-45 |
AAGAGTC | 65 | 0.005676584 | 29.379126 | 3 |
ATGCCGT | 90 | 2.0918378E-10 | 29.014639 | 46-47 |
CCAATAT | 35 | 0.008352931 | 27.157728 | 90-91 |
GAGTCAT | 70 | 0.008374098 | 27.130571 | 5 |
TGCTTGA | 120 | 7.2759576E-12 | 25.71752 | 58-59 |
ATCTCGT | 95 | 1.1841621E-8 | 24.988684 | 40-41 |
CTTGAAA | 115 | 1.3278623E-10 | 24.77139 | 60-61 |
TATCTCG | 100 | 2.0423613E-8 | 23.73925 | 38-39 |
TCTCGTA | 100 | 2.0423613E-8 | 23.73925 | 40-41 |