FastQCFastQC Report
Thu 4 Dec 2014
salivary_repl1_R1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamesalivary_repl1_R1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100000
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGC4240.424TruSeq Adapter, Index 10 (100% over 50bp)
CTGGGATGCACCGGCCAGAGGCCATGCTGCTGCTGCTCACGCTTGCCCTC1680.168No Hit
GCAAGAGTCATTTTGACCAGCAGATTAATCAACTGTAAGACGGATCCTCA1120.11199999999999999No Hit

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTACTC250.00501689856.9741977
CCAGTCT459.34685E-442.4365123
TATGCCG700.040.69585846-47
TCGTATG655.456968E-1240.17411442-43
CGTATGC750.037.982844-45
GATCCAA756.8804966E-637.98285
CATCTAC500.001612351537.98285
CTCGTAT652.0372681E-1036.52192342-43
GCCGTCT851.07320375E-1030.72138248-49
TGGATTG404.4924213E-429.6740616-17
GTATGCC1051.8189894E-1229.3914544-45
AAGAGTC650.00567658429.3791263
ATGCCGT902.0918378E-1029.01463946-47
CCAATAT350.00835293127.15772890-91
GAGTCAT700.00837409827.1305715
TGCTTGA1207.2759576E-1225.7175258-59
ATCTCGT951.1841621E-824.98868440-41
CTTGAAA1151.3278623E-1024.7713960-61
TATCTCG1002.0423613E-823.7392538-39
TCTCGTA1002.0423613E-823.7392540-41